[emboss-dev] Mapping EMBOSS to Ruby, Perl and Python
Pjotr Prins
pjotr.public78 at thebird.nl
Mon Nov 30 10:03:27 UTC 2009
Hi all,
I have started mapping some to the EMBOSS functions using Biolib. For
a write up see:
http://biolib.open-bio.org/wiki/Mapping_EMBOSS
Also I have migrated the CVS repository to git - it is hosted at
http://github.com/pjotrp/EMBOSS
and includes the whole CVS version history. I would strongly recommend
using git(hub) over CVS. In my experience it is much nicer to work
with and collaborate.
The next EMBOSS function I wish to map is 'getorf'. However, much of
the logic is in the main() routine. I'll try and move the logic out,
so an emboss_getorf() function is exported to Ruby (Perl and Python).
I'll send a patch for examination.
Pjotr Prins
Wageningen University
P.S. Note that Biolib maps the current EMBOSS tree ... !(*stable_6.1.0)
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