[emboss-dev] Fwd: Request For Work

[Karl Podesta]

Hi Jitesh, 

You might be interested in a paper I wrote a good few years ago now; 
I did an exploratory performance comparison of all EMBOSS apps in the
suite (at the time) by just running them with larger sequence sizes, 
and then wrote a shell script to parallelise them accross multiple 
cluster nodes on the basis of sequence only. Very basic, mostly 
exploratory and indicative, but it might be of some help. 
http://www.computing.dcu.ie/~kpodesta/papers/EMBOSSpaperLNCS.pdf

Regards, 
Karl

On Sun, Aug 10, 2008 at 12:48:33AM +0530, jitesh dundas wrote:
> Hi,
> 
> Based on the idea from Mr. Paul, I am trying to parallelize some of
> the cpu intensive  applications and hope if I can resolve some issues
> here.
> I am looking in Emboss Homepage for existing and past projects, to get
> a feel of the projects that may fit this requirement.
> Once done, we can plan and try to parallelize them. I have a few ideas
> here which I will share with you soon for your review and feedback.
> 
> Anybody having any ideas/inputs is most welcome.
> 
> Regards,
> Jitesh Dundas
> http://jiteshbdundas.blogspot.com
> Mobile- +91-9860925706
> 
> 
> ---------- Forwarded message ----------
> From: "Guermonprez, Paul" <paul.guermonprez at intel.com>
> Date: Wed, 30 Jul 2008 13:44:55 +0100
> Subject: RE: [emboss-dev] Request For Work
> To: jitesh dundas <jbdundas at gmail.com>
> 
> Hello,
> 
> You may try to parallelize some of the most cpu intensive apps ?
> 
> Regards, Paul.
> 
> 
> Paul Guermonprez - Intel
> Sr. Software Engineer - Intel Software EMEA
> email  : paul.guermonprez at intel.com
> phone  : +33 1 58 87 72 41
> mobile : +33 6 26 23 67 62
> 
> 
> 
> -----Original Message-----
> From: emboss-dev-bounces at lists.open-bio.org
> [mailto:emboss-dev-bounces at lists.open-bio.org] On Behalf Of jitesh
> dundas
> Sent: Wednesday, July 30, 2008 2:32 PM
> To: emboss-dev at lists.open-bio.org
> Subject: [emboss-dev] Request For Work
> 
>      Dear All,
> 
> Greetings!
> 
> I am interested in contributing to this wonderful project. Can somebody
> please suggest where to start?
> 
> *About MySelf*
> 
>   I want to persue a doctoral program in Bio-Informatics next year, for
> which I am preparing right now.
> 
> However, I am still looking for some guidance and work in this field to help
> me get the experience needed.
> 
> I have an inclination towards the fields of Finance,Medicine and Computers
> and constanlty look out for ways to use my knowledge and
> capabilities to innovate and discover in them.
> 
> I have a passion for research-work, working on complex and ambiguous
> problems. I relentlessly work towards resolving them until they are
> solved permanently with the best possible solution.
> I am always ready to learn new things and teach others too.
> 
> I can work independently as well as in teams with minimum supervision.
> 
> I continuously try to improvize in my work by focussing on innovation and
> scientific reasoning.
> 
> I am a hard-working, sincere and research-oriented professional with a
> scientific bend of mind and a never give-up attitude.
> 
> I hope you will give me an opportunity to explore the world of
> research under you.
> 
> Yours sincerely,
> Jitesh Dundas
> http://jiteshbdundas.blogspot.com
> Mobile- +91-9860925706
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