EMBOSS and the GenomeReviews databank

[Rodrigo Lopez]

Yes, it is very unfortunate that the genome reviews data is non-standard.
I'm forwarding this to the head of that project. He may have a comment
regarding the evidence tags present/future.

R:)


> -----Original Message-----
> From: owner-emboss-dev at hgmp.mrc.ac.uk 
> [mailto:owner-emboss-dev at hgmp.mrc.ac.uk] On Behalf Of Guy Bottu
> Sent: 28 July 2004 15:27
> To: emboss-dev at embnet.org
> Subject: EMBOSS and the GenomeReviews databank
> 
> 
> 	Dear developers,
> 
> I just noticed something that might interest you. At the 
> EMBL-EBI they 
> have a GenomeReviews databank (with complete bacterial chromosomes or 
> plasmids in one entry EMBL files). They however decided to 
> depart somewhat 
> from the EMBL format. When I run 
> seqret -feature grv:u00096_gr
> I get a lot of error messages of type :
> Warning: U00096_GR: Bad value 'AAC77270.1 {EMBL:U00096}' for 
> tag '/protein_id'
> Warning: bad /protein_id value 'AAC77271.1 {EMBL:U00096}'
> 
> 	Sincerely,
> 	Guy Bottu
>