CpG programs
Gary Williams, Tel 01223 494522
gwilliam at hgmp.mrc.ac.uk
Fri Dec 12 13:59:18 UTC 2003
EMBOSS has several programs for finding CpG islands:
cpgreport Reports all CpG rich regions
newcpgseek Reports CpG rich regions
newcpgreport Report CpG rich areas
The documentation (originally supplied by the author) says that for all
practical purposes you should probably use newcpgreport.
There is probably a case for retiring some of these programs to the
'make check' section of the Makefile? (i.e remove them from the standard
distribution unless explicitly compiled.)
Which of these, if any, do you use and why?
Regards,
Gary
--
Gary Williams
MRC Rosalind Franklin Centre for Genomics Research
Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
Tel: +44 1223 494522 Fax: +44 1223 494512
E-mail: gwilliam at rfcgr.mrc.ac.uk Web: http://www.rfcgr.mrc.ac.uk
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