Silent result update
Henrikki Almusa
henrikki.almusa at helsinki.fi
Tue Aug 5 08:18:39 UTC 2003
Hello,
I'm trying to rework the silent result format into emboss report format. I did
similar thing (and mailed to emboss-submit) to recoder, which has a similar
code as silent. However i have stumbled on something that i cannot understand
here. My current version of the patch for silent is attached.
The silent causes a segfault for reason i cannot understand. Heres some output
from gdb.
<gdb>
$ gdb -c core emboss/.libs/lt-silent
GNU gdb Red Hat Linux (5.3post-0.20021129.18rh)
Copyright 2003 Free Software Foundation, Inc.
GDB is free software, covered by the GNU General Public License, and you are
welcome to change it and/or distribute copies of it under certain conditions.
Type "show copying" to see the conditions.
There is absolutely no warranty for GDB. Type "show warranty" for details.
This GDB was configured as "i386-redhat-linux-gnu"...
Core was generated by `/work/hena/emboss-test/sources/emboss/.libs/lt-silent
/work/hena/emboss-2.7.0/m'.
Program terminated with signal 11, Segmentation fault.
Reading symbols from
/work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0...done.
Loaded symbols for
/work/hena/emboss-test/sources/nucleus/.libs/libnucleus.so.0
Reading symbols from
/work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0...done.
Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajaxg.so.0
Reading symbols from
/work/hena/emboss-test/sources/ajax/.libs/libajax.so.0...done.
Loaded symbols for /work/hena/emboss-test/sources/ajax/.libs/libajax.so.0
Reading symbols from
/work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5...done.
Loaded symbols for /work/hena/emboss-test/sources/plplot/.libs/libplplot.so.5
Reading symbols from /usr/X11R6/lib/libX11.so.6...done.
Loaded symbols for /usr/X11R6/lib/libX11.so.6
Reading symbols from /usr/lib/libgd.so.1.8...done.
Loaded symbols for /usr/lib/libgd.so.1.8
Reading symbols from /usr/lib/libpng12.so.0...done.
Loaded symbols for /usr/lib/libpng12.so.0
Reading symbols from /usr/lib/libz.so.1...done.
Loaded symbols for /usr/lib/libz.so.1
Reading symbols from /lib/i686/libm.so.6...done.
Loaded symbols for /lib/i686/libm.so.6
Reading symbols from /lib/i686/libc.so.6...done.
Loaded symbols for /lib/i686/libc.so.6
Reading symbols from /lib/libdl.so.2...done.
Loaded symbols for /lib/libdl.so.2
Reading symbols from /usr/lib/libfreetype.so.6...done.
Loaded symbols for /usr/lib/libfreetype.so.6
Reading symbols from /usr/lib/libjpeg.so.62...done.
Loaded symbols for /usr/lib/libjpeg.so.62
Reading symbols from /lib/ld-linux.so.2...done.
Loaded symbols for /lib/ld-linux.so.2
#0 0x40492490 in _int_free () from /lib/i686/libc.so.6
(gdb) list
107 AjBool allmut;
108 AjBool comp;
109
110 AjPList results1=NULL; /* for forward strand */
111 AjPList results2=NULL; /* for reverse strand */
112 AjPList shits;
113 AjPList nshits;
114
115 /*get all user input*/
116 embInit("silent", argc, argv);
(gdb)
<gdb>
TIA
--
Henrikki Almusa
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