est2genome
David Bauer
bauer at genprofile.com
Thu Mar 29 10:03:07 UTC 2001
Hi,
just an info for est2genome users.
I found est2genome having problems finding very short exons with the
default parameters.
With the folowing changes it detects also a 14bp exon correctly:
mismatch 1 -> 3
intronpenalty 40 -> 20
splicepenalty 20 -> 10
minscore 30 -> 10
David
--
Dr. David Bauer
GenProfile AG, Max-Delbrueck-Center, Erwin-Negelein-Haus
Robert-Roessle-Str. 10, D-13125 Berlin, Germany
bauer at genprofile.com, Tel:49-30-94892165, FAX:49-30-94892151
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