Question on EMBOSS libraries
Bill Shui
touro at capoeirabrasil.com.au
Tue Jul 3 23:28:45 UTC 2001
I am currently using EMBOSS for my thesis work.
My thesis project is to integrate key functionalities of emboss into
a XML database system, such that these functions could be activated by
invoking a function call in the XML query.
for example.
this could be equivalent to SQL's function call.
select multialign(sequence) from TableA where sequence_id = "blerg";
the multialign function will be a modified emboss function which
carries out the multiple sequence alignments.
what I do not need to used functions in the ajax/emboss/nucleus libraries
that loads data from acd files, etc. All I need are the core functions that
does the actual computation work.
I have started reading through the emboss source code, but I'm a bit unclear
as to which functions could be regarded as the core functions. (that exclude
all the acd file loading, codon table loading, etc...)
thanks in advance.
regards.
Bill
--
<Reed> It is important to note that the primary reason the
Roman Empire fail is that they had no concept of
zero... thus they could not test the success or
failure of their C programs.
---------------------------------------------
Bill Shui Email: wshui at mail.usyd.edu.au
touro at capoeirabrasil.com.au
bill.shui at proteomesystems.com
Bioinformatics Programmer
More information about the emboss-dev
mailing list