-osformat strangeness
gwilliam at hgmp.mrc.ac.uk
gwilliam at hgmp.mrc.ac.uk
Thu Aug 10 13:19:51 UTC 2000
Can anyone explain this behaviour? When I use '-osf staden' or '-osf
gcg' I get no output but no error messages.
% seqret ttt.seq stdout
Reads and writes (returns) sequences
>
AGCTAGGGCTTAAA
[OK - this is a short test sequence, but the error occurs with longer
sequences, eg embl:hsfau]
% seqret ttt.seq stdout -osf gcg
Reads and writes (returns) sequences
[Where did the output go?]
% seqret ttt.seq stdout -osf staden
Reads and writes (returns) sequences
[Ditto!]
% seqret ttt.seq stdout -osf embl
Reads and writes (returns) sequences
ID standard; DNA; UNC; 14 BP.
SQ Sequence 14 BP; 5 A; 2 C; 4 G; 3 T; 0 other;
AGCTAGGGCT TAAA 14
//
[now it works]
The only output formats I think this happens with are gcg and staden.
Thanks,
Gary
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