[Dynamite] update

[Ian Holmes]

On Wed, 26 Apr 2000, Guy Slater wrote:

> I had a go, and the tests ran fine ... looks good.
> 
> There seem to be lots of files ending in ~  Is that an emacs thing ?

Yes emacs. I've added an "m" (maintenance) directory at the top level now,
with a cleanup script that removes these. Will get round to posting soon.

I suspect it would make more sense to use a Berkeley CVS repository
for the perl side of things. I'll get you both accounts.

> Is this still supposed to correspond to the idl in the wiki,
> or has that been put aside for the moment ?
> Browsing the code, I can't see the correspondance.

The wiki design has informed this strongly, but names have changed.

In particular
	ScoreModule --> ScoreManager.pm
	SeqModule --> Alphabet.pm, AlphabetFactory.pm
                      (Seq objects redundant)
	ParameterModule --> Param.pm, ParamFactory.pm, Param/*.pm
	MetaSeqModule --> redundant, can use polymer Params instead

I want to combine wiki with perldoc, for this and for Chris's Gadfly docs.
Can either of you supply with the name of the person who wrote the pretty
pod2html code for ensembl?

Ian