[DAS2] approval and maintenance of DAS/2 URI namespaces
Garret Wilson
garret at globalmentor.com
Fri Feb 29 18:31:12 UTC 2008
I read the "list of global identifiers based on community consensus" at:
http://www.biodas.org/wiki/GlobalSeqIDs
It's great the DAS/2 is using URIs for global identification. For
example, chromosome 1 for the B36.1 human genome assembly is identified
by the URI:
http://www.ncbi.nlm.nih.gov/genome/H_sapiens/B36.1/dna/chr1
I'm unclear, however, regarding NCBI knowledge, participation, and
maintenance of these URIs. The system of uniform resource identifiers
prevents name clashes by delegating to the IANA-governed domain-name
system, so that whoever owns a particular domain-based namespace can
manage the URIs within that namespace.
If DAS/2 were to use, for example, the http://www.biodas.org/genome/
namespace to manage all genome assembly URIs, I would have no cause for
concern. DAS/2 is instead using several namespaces managed by other
parties. I hope the response is that the NCBI is fully aware that its
URI namespace is being used as authoritative genome assembly URIs and
has either committed to maintaining that namespace or has delegated
maintenance of the http://www.ncbi.nlm.nih.gov/genome/ namespace to DAS.
(If the latter is true, it is unclear which organization would receive
such a delegation of maintenance responsibility---the Open
Bioinformatics Foundation? The BioTeam?)
Thanks for any clarifications---this question is raised solely out of a
desire for long-term standards that can be use consistently by the
community.
Garret
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