[DAS2] Accelerating interval queries

Ann Loraine aloraine at gmail.com
Tue Jun 26 03:58:13 UTC 2007


This is definitely needed.

How do we incorporate this into our own schema?

On 6/25/07, Steve Chervitz <Steve_Chervitz at affymetrix.com> wrote:
> Of potential interest to genome DAS server implementers:
> Nested Containment List (NCList): a new algorithm for accelerating interval
> query of genome alignment and interval databases
> http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/11/1386
> Any comments on this approach or comparison with other methods?
> Steve
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Ann Loraine
Assistant Professor
University of Alabama at Birmingham

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