[DAS2] stylesheets today

[Andrew Dalke]

Gregg:
> I can't remember if stylesheets were already on the agenda for
> today, but if that's what's on your mind, sounds like a good topic to
> start with.

I actually don't want to talk about it.  I don't know enough about
the topic.  I have ideas and comments.  It was more I remembered at
the wrap-up for the sprint where someone (you?) proposed that the
next meeting be on stylesheets.  If so, I want to be prepared to
talk about it.

Ahh, I misremembered.  From Steve's notes

     gh: Something we need todo: come back to stylesheet issue.
     ad: we should have impl in place before making spec work.

     [A] Discuss stylesheets when we have an impl in place


In other action items, has anyone developed some use guidelines
for generating DAS2 data?  Eg, recommended ways to do alignments,
BLAST hits, complex parent/part relationships?

Also, guidelines in how to convert GFF3 into DAS2 feature xml?
I don't know where all of the fields are supposed to go in the
free-form area.  Examples from flybase


ID=FBti0020396;Name=Rt1c{}1472;Dbxref=FlyBase+Annotation+IDs: 
TE20396,FlyBase:FBt
i0020396;cyto_range=102A1-102A1;gbunit=AE003845;synonym=TE20396; 
synonym_2nd=Rt1c
{}1472

ID=FBgn0004859;Name=ci;Dbxref=FlyBase+Annotation+IDs:CG2125,FlyBase: 
FBan0002125,FlyBase:FBgn0004859;cyto_range=102A1-102A3; 
dbxref_2nd=FlyBase:FBgn0000314,FlyBase:FBgn0000315,FlyBase: 
FBgn0010154,FlyBase:FBgn0010155,FlyBase:FBgn0017411,FlyBase: 
FBgn0019831;gbunit=AE003845;synonym_2nd=Ce,Ci,CI,ci155,ciD,ci- 
D,CiD,CID,ci<up>D</up>,Ci<up>D</up>,Cubitus+interruptus,cubitus- 
interruptus-Dominant,l(4)102ABc,l(4)13,l(4)17

What should I do with those?  Dump them into the key/value property  
field?




					Andrew
					dalke at dalkescientific.com