[DAS2] Re: Re DAS2 Server
boconnor at ucla.edu
Wed Mar 1 21:34:38 UTC 2006
So I think your best option is to try the RPM. I built a Fedora Core 2
RPM for DAS2 and just released it to http://biopackages.net last night.
I could really use someone to test it so feedback would be great. The
RPM approach is nice because yum will take care of installing all the
dependencies including the chado database.
If you're not using FC2 then it's a little but more involved. We don't
really have a lot of docs but I could update the README in cvs (see
http://sourceforge.net/projects/gmod it's the "das2" module). Until
recently there wasn't really an install process you just do a "perl
Makefile.PL; make; make test" to run DAS2. There's now an "install"
target so you can do "perl Makefile.PL; make; sudo make install". You
need to set some environmental variables, install a chado DB, and make
sure all the perl module dependencies are installed before you do this
though. See the Makefile.PL for the environmental variables you need to
set. I'll update the README to include information about the dependencies.
Hope this helps! I cc'd Allen Day too, he might have some helpful hints...
Vidya Edupuganti wrote:
>I am trying to setup DAS/2 server so that it can be used with Affymetrix's
>IGB browser. I was trying to find a user manual for setting up DAS/2 server.
>I could not find any. Can you please direct me to a place where I can find
>it. If there isn't any can you please give me some inputs on how to install
>a DAS/2 server and load data.
>I really appreciate your help,
>Bioinformatician, Bioinformatics Research Unit
>The Translational Genomics Research Unit (TGen)
>445 N. Fifth St
>Phoenix, AZ, 85004, USA
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