[DAS2] Re: New DAS/2 server for codesprint

[Helt,Gregg]

Following Steve's suggestion, I'm focusing on the region around YGL076C
(also known as RPL7A) on the yeast genome to get a small slice of
feature XML back from the codesprint server for a region where I know
what the genes  should be:

http://das.biopackages.net/das/genome/yeast/S228C/feature?overlaps=chrVI
I/364251:366080;type=SO:gene

This returns the YGL076C gene with three CDS and two introns.  A nearby
snoRNA also gets returned. 

	Gregg

> -----Original Message-----
> From: Chervitz, Steve 
> Sent: Monday, February 06, 2006 5:03 PM
> To: Helt,Gregg; Allen Day
> Cc: DAS/2
> Subject: Re: [DAS2] Re: New DAS/2 server for codesprint
> 
> 
> 
> There's a gene (RPL7A) with two introns on chr7 at roughly 
> 366kbp - 364kbp: 
> http://db.yeastgenome.org/cgi-bin/locus.pl?locus=YGL076C
> 
> Most genes with introns in cerevisiae (which aren't many) 
> have just a single intron that creates a small 5' exon, such 
> as the alpha and beta tubulin genes on chr13. Tub1 is on 
> chr13 at 99Kbp, and tub3 is also on chr13 at 23Kbp. So the 
> first 100Kb of chr13 would be another region to try. 
> http://db.yeastgenome.org/cgi-bin/locus.pl?locus=tub1
> 
> Steve
> 
> 
> > From: "Helt,Gregg" <Gregg_Helt at affymetrix.com>
> > Date: Mon, 6 Feb 2006 16:14:55 -0800
> > To: Allen Day <allenday at ucla.edu>
> > Cc: DAS/2 <das2 at portal.open-bio.org>
> > Conversation: [DAS2] Re: New DAS/2 server for codesprint
> > Subject: RE: [DAS2] Re: New DAS/2 server for codesprint
> > 
> > 
> > Allen, can you recommend a reasonable region on yeast to do 
> a features 
> > query that will return features with some hierarchy (like 
> > transcript/exons)?
> > 
> > Thanks,
> > Gregg
> > 
> > 
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>