[DAS2] Nested features?

James Gilbert jgrg at sanger.ac.uk
Wed Sep 28 13:28:01 UTC 2005


I have been looking at the example of features under the "The Das2XML- 
Formatted Feature Response" heading on:


How do I represent the translation region within a transcript which  
contains UTRs? I don't think the example does.

I think the definition for das:phase needs to be tied down. Is it the  
(zero based) index of the dna string where you start the traslation  
in the exon, or is it the index in the codon broken by the splice site?


James G.R. Gilbert         The Morgan Building,  Sanger Institute
Wellcome  Trust  Genome  Campus,   Hinxton,  Cambridge,  CB10 1HH

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