[DAS2] imported data into bug tracker
Ed Griffiths
edgrif at sanger.ac.uk
Thu May 12 18:02:11 UTC 2005
All,
> I think the zmap client Ed Griffiths is talking about is going to be
> implemented in C or C++. Ed?
The zmap is implemented in C. Most of the code would not be appropriate to be
implemented as a .so file but.....
zmap (our client) is structured like this:
------ file reader
|
GUI ----- generalised -----|------ acedb server interface
data source |
interface |
|------ DAS2 server interface
|
etc
the DAS2 server interface could be to a C based parser written as a .so
library...we have to write the code to do the parsing so it could potentially
form the basis of a DAS2 C parser...
I say "potentially" because I would need to think about how much work it would
be as we are on a pretty tight schedule for the rest of the work...
But a good idea...
Ed
> > Is there a distiction made between these in CVS, i.e. are they in
> separate
> > repositories? Have you considered implementing some client components
> in
> > C? The reason I ask is that I'm interested in having a .so to link to
> so
> > that I can use a common DAS client API from R, Java, and Perl as well.
--
** PLEASE NOTE NEW ADDRESS/PHONE NUMBER **
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| Ed Griffiths, Acedb development, Informatics Group, |
| The Morgan Building, Sanger Institute, Wellcome Trust Genome Campus |
| Hinxton, Cambridge CB10 1HH |
| |
| email: edgrif at sanger.ac.uk Tel: +44-1223-496844 Fax: +44-1223-494919 |
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