[DAS2] types and ontologies
Brian O'Connor
boconnor at ucla.edu
Mon Jun 20 18:04:48 UTC 2005
Hi,
I have a question about the status of this bug:
http://bugzilla.open-bio.org/show_bug.cgi?id=1792. I'm working with
Allen on an internal application that uses the /das/assay namespace to
retrieve microarray data. What is the consensus on this bug? Are
non-sequence features annotated with terms from other ontologies
allowed? I know this is outside the scope of the current spec but I was
curious what people think about this.
Ideally I want to be able to query for which ontologies are available as
well. For example something like:
http://.../das/assay/chado/chado-Hsa-17/ontology/ would return an XML
document describing the ontologies loaded. This could be used to filter
a types query ie /das/assay/chado/chado-Hsa-17/type?namespace=foo.bar.
Although I see Lincoln mentioned using a "brief" form on the type
request to do essentially the same thing (bug
http://bugzilla.open-bio.org/show_bug.cgi?id=1791). This seems like a
reasonable way to go, how do other people feel?
--Brian
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