[DAS2] getting mail delivery failures when commiting to sourceforge

[Helt,Gregg]

I just tried to do a number of commits to the genoviz sourceforge
repository, and got a whole bunch of bounced back mail about delivery
failures.  As far as I can tell, the commits themselves went through.
Steve or Ed, any idea what's going on?

	thanks,
	gregg

> -----Original Message-----
> From: Mail Delivery System
[mailto:Mailer-Daemon at users.sourceforge.net]
> Sent: Monday, August 08, 2005 3:46 PM
> To: gregghelt2 at users.sourceforge.net
> Subject: Mail delivery failed: returning message to sender
> 
> This message was created automatically by mail delivery software.
> 
> A message that you sent could not be delivered to one or more of its
> recipients. This is a permanent error. The following address(es)
failed:
> 
>   genoviz-cmts at lists.sourceforge.net
>     SMTP error from remote mailer after RCPT TO:<genoviz-
> cmts at lists.sourceforge.net>:
>     host externalmx-1.sourceforge.net [12.152.184.25]:
>     550-Verification failed for <gregghelt2 at users.sourceforge.net>
>     550-Called:   206.173.192.170
>     550-Sent:     RCPT TO:<postmaster at affymetrix.com>
>     550-Response: 550 5.7.1 <postmaster at affymetrix.com>... User
unknown
>     550 Sender verify failed
> 
> ------ This is a copy of the message, including all the headers.
------
> 
> Return-path: <gregghelt2 at users.sourceforge.net>
> Received: from localhost.localdomain ([127.0.0.1]
> helo=projects.sourceforge.net)
> 	by sc8-pr-cvs1.sourceforge.net with esmtp (Exim 4.20)
> 	id 1E2GNV-0001mX-He
> 	for genoviz-cmts at lists.sourceforge.net; Mon, 08 Aug 2005
15:45:53 -
> 0700
> From: Gregg Helt <gregghelt2 at users.sourceforge.net>
> To: genoviz-cmts at lists.sourceforge.net
> Subject: genoviz/igb/src/com/affymetrix/igb/genometry
> AnnotatedSeqGroup.java,1.3,1.4
> Date: Mon, 08 Aug 2005 22:45:43 +0000
> X-Mailer: Python syncmail $Revision: 1.2 $
<http://sf.net/projects/cvs-
> syncmail>
> Message-Id: <E1E2GNV-0001mX-He at sc8-pr-cvs1.sourceforge.net>
> 
> Update of
/cvsroot/genoviz/genoviz/igb/src/com/affymetrix/igb/genometry
> In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv6828
> 
> Modified Files:
> 	AnnotatedSeqGroup.java
> Log Message:
> Changed AnnotatedSeqGroup.addSeq() method to throw a RuntimeException
is
> try to add a sequence whose id matches that of a sequence that's
already
> in the group.
> 
> Index: AnnotatedSeqGroup.java
> ===================================================================
> RCS file:
>
/cvsroot/genoviz/genoviz/igb/src/com/affymetrix/igb/genometry/AnnotatedS
eq
> Group.java,v
> retrieving revision 1.3
> retrieving revision 1.4
> diff -C2 -d -r1.3 -r1.4
> *** AnnotatedSeqGroup.java	26 Jul 2005 18:51:45 -0000	1.3
> --- AnnotatedSeqGroup.java	8 Aug 2005 22:45:40 -0000	1.4
> ***************
> *** 1,10 ****
>   /**
>   *   Copyright (c) 2001-2004 Affymetrix, Inc.
> ! *
>   *   Licensed under the Common Public License, Version 1.0 (the
> "License").
>   *   A copy of the license must be included with any distribution of
>   *   this source code.
>   *   Distributions from Affymetrix, Inc., place this in the
> ! *   IGB_LICENSE.html file.
>   *
>   *   The license is also available at
> --- 1,10 ----
>   /**
>   *   Copyright (c) 2001-2004 Affymetrix, Inc.
> ! *
>   *   Licensed under the Common Public License, Version 1.0 (the
> "License").
>   *   A copy of the license must be included with any distribution of
>   *   this source code.
>   *   Distributions from Affymetrix, Inc., place this in the
> ! *   IGB_LICENSE.html file.
>   *
>   *   The license is also available at
> ***************
> *** 38,43 ****
> 
>     public MutableAnnotatedBioSeq getSeq(int index) {
> !     if (index < seqlist.size()) {
> !       return (MutableAnnotatedBioSeq)seqlist.get(index);
>       }
>       else { return null; }
> --- 38,43 ----
> 
>     public MutableAnnotatedBioSeq getSeq(int index) {
> !     if (index < seqlist.size()) {
> !       return (MutableAnnotatedBioSeq)seqlist.get(index);
>       }
>       else { return null; }
> ***************
> *** 102,106 ****
>       }
>     }
> !
>     public MutableAnnotatedBioSeq addSeq(String seqid, int length) {
>       MutableAnnotatedBioSeq aseq = new SmartAnnotBioSeq(seqid,
> this.getID(), length);
> --- 102,106 ----
>       }
>     }
> !
>     public MutableAnnotatedBioSeq addSeq(String seqid, int length) {
>       MutableAnnotatedBioSeq aseq = new SmartAnnotBioSeq(seqid,
> this.getID(), length);
> ***************
> *** 110,117 ****
> 
>     public void addSeq(MutableAnnotatedBioSeq seq) {
> !     id2seq.put(seq.getID(), seq);
> !     seqlist.add(seq);
> !     if (seq instanceof SmartAnnotBioSeq) {
> !       ((SmartAnnotBioSeq)seq).setSeqGroup(this);
>       }
>     }
> --- 110,124 ----
> 
>     public void addSeq(MutableAnnotatedBioSeq seq) {
> !     MutableAnnotatedBioSeq oldseq =
> (MutableAnnotatedBioSeq)id2seq.get(seq.getID());
> !     if (oldseq == null) {
> !       id2seq.put(seq.getID(), seq);
> !       seqlist.add(seq);
> !       if (seq instanceof SmartAnnotBioSeq) {
> ! 	((SmartAnnotBioSeq)seq).setSeqGroup(this);
> !       }
> !     }
> !     else {
> !       throw new RuntimeException("ERROR! tried to add seq: " +
> seq.getID() + " to AnnotatedSeqGroup: " +
> ! 				 this.getID() + ", but seq with same id
is already
> in group");
>       }
>     }