[DAS] das chromosome location focussed annotation file, web-upload, error ?

Potthast, Frank frank.potthast at fgcz.ethz.ch
Wed Jun 8 10:11:04 EDT 2005


Hi,

We are trying to annotate C.Elegans in ensemlbl using e.g.
http://www.ensembl.org/Caenorhabditis_elegans/contigview?l=I:5555-5555
when we upload a file containing lines like that below, (tab separated, 10 columns, chromosome location focussed),
we get a timeout error on the DAS server. Anything obvious we're doing wrong?
In the example below, we try to map a peptide to chromosome I bp-positions 5906577 to 5906618. 

20020050415_S2_51_54.3496.3496.2   ETVQSESNQICLSK  pepnailer       identity I       5906577 5906618 +       .       100

Greetings from Zurich ... Frank

---------------------------------
Functional Genomics Center Zurich
Frank Potthast, PhD
Senior Research Scientist
Proteome Informatics
frank at fgcz.ethz.ch
+41 79 46 180 72
skype.com: frank.potthast
---------------------------------




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