[DAS] LDAS server

[Lincoln Stein]

bulk_load_gff.pl is part of the bioperl 1.2 distribution.  As indicated in the 
ldas install documents, you need to find this script in bioperl and install 
it in your command path.  Look in bioperl/scripts/Bio-DB-GFF

Lincoln

On Tuesday 14 January 2003 02:53 am, Colm Nestor wrote:
> Bug reports:
>
> Using latest version of LDAS, downloaded yesterday.
>
>
> 1.
>
> Cannot get ldas_bulk_load.pl to work:
>
> [srs@mysql testdata]$ /usr/local/bin/ldas_bulk_load.pl --create --database
> ensembl_das test.das
> Can't exec "bulk_load_gff.pl": No such file or directory at
> /usr/local/bin/ldas_bulk_load.pl line 90.
> [srs@mysql testdata]$
>
> There is a system call to a perl script at line 90, I cannot find this
> script anywhere.
>
> Note:
>       The other loading script, ldas_load.pl works fine:
>
> [srs@mysql testdata]$ perl /usr/local/bin/ldas_load.pl --create --database
> ensembl_das test.das
> test.das: loading...
> test.das: 35 records loaded
> [srs@mysql testdata]$
>
> I have installed all software requested. And am running on RedHat7.2.
>
> Kindest regards,
> Colm Nestor,
> DeCODE Genetics,
> ICELAND.
>
>
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> DAS@biodas.org
> http://biodas.org/mailman/listinfo/das

-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
	1 Bungtown Road, Cold Spring Harbor, NY 11724
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