[DAS] How to represent variations on DAS?
lstein at cshl.org
Thu Apr 17 10:05:14 EDT 2003
For deletions, you can represent the deletion as its endpoints. For
insertions, you can provide a 0 bp range and then give the inserted sequence
as a <target>. For substitutions, you can provide a region equal to the size
of the substitution, and then give the alternate sequence as the <target>.
On Tuesday 15 April 2003 09:41 pm, Linus Taejoon Kwon wrote:
> Is it possible to represent the variation/mutation information using DAS?
> I think that it's not easy to use DAS protocol for
> (1) indel site (how can I define the position of insertion?)
> (2) the alternative sequence information
> If the documents related to this issue, please let me know.
> (I cannot find any clues in current DAS/1 Sepc. and DAS/2 RFCs)
> Taejoon Kwon
> linusben (at) bawi (dot) org
> DAS mailing list
> DAS at biodas.org
Lincoln D. Stein Cold Spring Harbor Laboratory
lstein at cshl.org Cold Spring Harbor, NY
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