[DAS] Info about BioXML

[Paul Gordon]

<!-- Thanks for the plug, James -->

I've had 9000 hits to that page since June, so there seems to be a
community need for this information. I try to keep this page current, and
people do mail me updates on their work. This is also related directly to
my research (in terms of interoperability of various formats, XSLT
mapping, etc. covering a broad swath of application domains), so I'd being
willing to resurrect bioxml.org in conjunction with Matthew.  There is a
lot more kinds of information I'd like to add.

I'm especially interested in setting up a standard URN namespace and
repository for peoples various formats and any contributions 
people have for data transformation and presentation.  This is very much
in the open-bio spirit, I think...

----------------------------------------------------
Purgamentum init, exit purgamentum

Paul Gordon
Research Associate
Faculty of Medicine
University of Calgary

On Tue, 24 Sep 2002, James Freeman wrote:

> Hi Folks,
> 
> A good start to this exists and is at:
> 
> http://www.visualgenomics.ca/gordonp/xml/
> 
> The I3C has its sights on either AGAVE or BSML, BSML is a valid output 
> in bioperl, so that is also a good start, at least a fast one.
> 
> Warmest Regards,
> 
> Jim
<snip />
> >>-----Original Message-----
> >>From: Matthew Pocock [mailto:matthew_pocock@yahoo.co.uk] 
> >>Sent: Wednesday, 25 September 2002 12:16 a.m.
> >>To: Wiepert, Mathieu
> >>Cc: 'Suraj_Meiyur'; 'das@biodas.org'
> >>Subject: Re: [DAS] Info about BioXML
> >>
> >>Hi,
> >>
> >>BioXML would be a good thing to resurrect. I would be happy to help 
> >>manage it. My vision would be to publish several (perhaps many) small 
> >>xml-schema deffinitions for common biological data types & 
> >>encoders/decoders for each project. This should help us avoid getting 
> >>bogged down in the eternal data-model for everything quagmire.
<snip />
> >>>>-----Original Message-----
> >>>>From: Suraj_Meiyur [mailto:Suraj_Meiyur@satyam.com]
> >>>>Sent: Monday, September 23, 2002 5:16 AM
> >>>>To: 'das@biodas.org'
> >>>>Subject: [DAS] Info about BioXML
> >>>>
> >>>>
> >>>>Hi,
> >>>>	I am a Bioinformatician and would like to know more
> >>>>about bioxml.
> >>>>The site www.bioxml.org doesn't seem to work. Does that mean 
> >>>>an end to the
> >>>>initiative or a temporary hitch in services that are being 
> >>>>rendered by the
> >>>>bioxml community.
> >>>>
> >>>>Regards,
> >>>>Suraj