[DAS] Possible XML error with LDAS 1.08

[Angie Hinrichs]

I would change that once more to this:

  print qq(      <GROUP id="$groupid">$gclass</GROUP>\n);

The id attribute should be set inside the opening tag, not outside.

Angie
angie@soe.ucsc.edu
Software Developer, UCSC CBSE / Genome Bioinformatics Group

On Mon, 28 Oct 2002, Tom Fahland wrote:

> Mark
> 
> I got that same problem and just did a quick fix of the format. 
> Its been alittle while so I just did a difference of the das perl code
> and I simply changed the following and it worked. 
> Tom
> 
> <       print qq(      <GROUP id="$groupid"$gclass />\n);
> ---------
> >  print qq(      <GROUP> id="$groupid"$gclass</GROUP>\n);
> 
> -----Original Message-----
> From: Gosink, Mark (SEA) [mailto:Mark.Gosink@sea.celltechgroup.com]
> Sent: Monday, October 28, 2002 3:00 PM
> To: 'das@biodas.org'
> Subject: [DAS] Possible XML error with LDAS 1.08
> 
> 
> 
> Hello all,
> 	I'm getting an error with the output from the LDAS version 1.08
> when
> I run the test URL:
> 	
> http://my.web.address/cgi-bin/das/dicty/features?segment=Cont_1a;type=RN
> Ai
> 
> 	Below is the output generated. Notice the "<GROUP
> id="RNAi:exper1"RNAi />".  For some reason the XML doesn't appear to be
> forming correctly. It happens with some of the other test urls as well.
> Is
> this a bug or am I missing something? Does this happen with the earlier
> versions?
> Thanks,
> Mark
> 
> <?xml version="1.0" standalone="yes"?>
> <!DOCTYPE DASGFF SYSTEM "http://www.biodas.org/dtd/dasgff.dtd">
> <DASGFF>
> <GFF version="1.01"
> href="http://my.web.address/cgi-bin/das/dicty/features?segment=Cont_1a;t
> ype=
> RNAi">
> <SEGMENT id="Cont_1a" start="1" stop="5000" version="1.0">
>    <FEATURE id="RNAi:exper1/31" label="exper1">
>       <TYPE id="RNAi" category="experimental">RNAi</TYPE>
>       <METHOD id="RNAi">RNAi</METHOD>
>       <START>1</START>
>       <END>2500</END>
>       <SCORE>-</SCORE>
>       <ORIENTATION>+</ORIENTATION>
>       <PHASE>0</PHASE>
>       <GROUP id="RNAi:exper1"RNAi />
>    </FEATURE>
> </SEGMENT>
> </GFF>
> </DASGFF>
> 
> 
> 
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