[DAS] we just setup a DAS:"Error retrieving features"

Haiyan Wang haiyan.wang@molgen.mpg.de
Wed, 27 Mar 2002 19:33:39 +0100


Hi, Everyone,

We set up a DAS Server and configured a data source to annotate Ensembl
following the excellent instructions of Tony Cox.
We ended up with a webpage at http://tomcat.molgen.mpg.de:8080/das and
added it to the Ensembl DAS sources.
However we get a "Error retrieving * .... features" in the contig-view
of Ensembl, if we select our DAS-source.
We also try to issue 'features' request at , for example
http://tomcat.molgen.mpg.de:8080/das/EPD_promoters/features?segment=AC012462.5.1.143947:70000,72000

But Netscape tells us: "A communications error occured".

Did anyone else face similar problems?

BR
Haiyan

(Here is our 'dazzlecfg.xml')

<dazzle xmlns="http://www.biojava.org/2000/dazzle">

<!-- Human 428 data bridge -->
<resource id="ensembl428_bridge" jclass="ensembl.EnsemblHolder">
<string name="dbURL" value="jdbc:mysql://kaka/homo_sapiens_core_4_28" />

<string name="dbUser" value="anonymous" />
<string name="dbPass" value="" />
<int name="schemaVersion" value="4" />
</resource>


  <datasource id="EPD_promoters"
jclass="ensembl.EnsemblGenericSeqFeatureSource">
    <string name="ensemblHolderID" value="ensembl428_bridge" />
    <string name="name" value="EPD_Promoters" />
    <string name="description" value="Promoter positions" />
    <string name="version" value="1.0" />
    <string name="mapMaster"
     value="http://servlet.sanger.ac.uk:8080/das/ensembl428" />

 <string name="dbURL" value="jdbc:mysql://markov/epd" />
    <string name="dbUser" value="wang_h" />
    <string name="dbPass" value="ext002" />
    <string name="tableName" value="EPD_promoter" />
    <string name="stylesheet" value="stylesheet.xml" />
  </datasource>
</dazzle>