[DAS] we just setup a DAS:"Error retrieving features"
Haiyan Wang
haiyan.wang@molgen.mpg.de
Wed, 27 Mar 2002 19:33:39 +0100
Hi, Everyone,
We set up a DAS Server and configured a data source to annotate Ensembl
following the excellent instructions of Tony Cox.
We ended up with a webpage at http://tomcat.molgen.mpg.de:8080/das and
added it to the Ensembl DAS sources.
However we get a "Error retrieving * .... features" in the contig-view
of Ensembl, if we select our DAS-source.
We also try to issue 'features' request at , for example
http://tomcat.molgen.mpg.de:8080/das/EPD_promoters/features?segment=AC012462.5.1.143947:70000,72000
But Netscape tells us: "A communications error occured".
Did anyone else face similar problems?
BR
Haiyan
(Here is our 'dazzlecfg.xml')
<dazzle xmlns="http://www.biojava.org/2000/dazzle">
<!-- Human 428 data bridge -->
<resource id="ensembl428_bridge" jclass="ensembl.EnsemblHolder">
<string name="dbURL" value="jdbc:mysql://kaka/homo_sapiens_core_4_28" />
<string name="dbUser" value="anonymous" />
<string name="dbPass" value="" />
<int name="schemaVersion" value="4" />
</resource>
<datasource id="EPD_promoters"
jclass="ensembl.EnsemblGenericSeqFeatureSource">
<string name="ensemblHolderID" value="ensembl428_bridge" />
<string name="name" value="EPD_Promoters" />
<string name="description" value="Promoter positions" />
<string name="version" value="1.0" />
<string name="mapMaster"
value="http://servlet.sanger.ac.uk:8080/das/ensembl428" />
<string name="dbURL" value="jdbc:mysql://markov/epd" />
<string name="dbUser" value="wang_h" />
<string name="dbPass" value="ext002" />
<string name="tableName" value="EPD_promoter" />
<string name="stylesheet" value="stylesheet.xml" />
</datasource>
</dazzle>