[DAS] gaps in Ensembl

[Lincoln Stein]

DAS doesn't care whether the underlying DNA contains nucleotides or N's.  It 
only cares about coordinates.  So if you have something that you know spans 
an unsequenced area, such as a pair of BAC ends, DAS will work just fine.

Lincoln

On Thursday 03 January 2002 13:06, Ewan Birney wrote:
> On Thu, 3 Jan 2002, Simon Chan wrote:
> > Hi Everyone,
> >
> > I know that Ensembl sticks "N"s in the gaps (unsequenced data).  What
> > happens if the data we overlay spans a region which contains
> > unsequenced and sequenced data?
>
> Nothing, but i've got to question why you might want to do that...
>
> > Many thanks for your time, Everyone!
> >
> > Warmest Regards,
> > Simon Chan
> >
> >
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> > DAS@biodas.org
> > http://biodas.org/mailman/listinfo/das
>
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-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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