[DAS] Dazzle with Ensembl 3.26.1

[Thomas Down]

On Fri, Feb 15, 2002 at 10:21:29AM -0000, Stefano Tine wrote:
> 
> Thanks for the quick release.
> 
> I have now:
> 
> Dazzle 0.95
> Tomcat 4.0.2
> Ensembl 3.26.1 (with human_trace.pm and mouse_trace.pm
> still desaparecidos)
> 
> and.. I still have the long loading times even with the
> simple (one DAS service) dazzlecfg.xml listed below :-((
> 
> 31" just for a random call such as
> /Homo_sapiens/contigview?chr=5&highlight=&vc_start=82457556&vc_end=82557555
> 
> with one SNP-type DAS service on. This only takes a couple seconds
> when using 1.2.0 schema and Ensembl 1.2.0 distribution.


Hmmm, worrying...

How big is your snps.gff file?

I'm still not sure I understand what's going on here.  It
makes me wonder if maybe an index got lost when you loaded
tables into your database (the Java code uses the database
in a slightly different way to the Perl, so it's possible that
an indexing change could clobber biojava-ensembl, but still
leave contigview running normally).

Anyone else got any ideas about this?

    Thomas.