[DAS] Help setting up LDAS

[Benjamin L. King]

Hi Jim,

Thank you for your speedy reply.  You identified the problem.  I did not
have dicty.conf in the das.conf directory.

Thank you again!

- Ben

On Fri, 7 Dec 2001, jfreeman wrote:

> Hello,
> 
> Could you please give me a listing of the directory where your
> httpd.conf file is?
> 
> You have to have your dicty.conf file sitting in the directory das.conf
> sitting under your httpd/conf directory.  This might be the problem.
> 
> Regards,
> 
> Jim
> "Benjamin L. King" wrote:
> > 
> > Hello,
> > 
> > I'm in the process of setting up a LDAS server and need some help with
> > its configuration on the web side of things.
> > 
> > I've been following the LDAS installation instructions and am trying to
> > test it using test data from the distribution.  I've got all the
> > required products running and tested (as far as I can tell).  The
> > following 'dsn' query does not show my test database, named 'dicty'.
> > Instead it returns information about the other DAS servers (C.Elegans and
> > the test.org DAS server).
> > 
> > http://crick.informatics.jax.org:8080/cgi-bin/das/dsn
> > 
> > Here's the results of the query:
> > 
> > Date: Fri, 07 Dec 2001 16:49:03 GMT
> >  Server: Apache/1.3.22 (Unix)
> >  x-das-status: 200 OK
> >  x-das-version: DAS/1.00
> >  Connection: close
> >  Content-Type: text/plain; charset=ISO-8859-1
> > 
> >  <?xml version="1.0" standalone="yes"?>
> >  <!DOCTYPE DASDSN SYSTEM "http://www.biodas.org/dtd/dasdsn.dtd">
> >  <DASDSN>
> >     <DSN>
> >        <SOURCE id="elegans">elegans</SOURCE>
> >        <MAPMASTER>http://www.wormbase.org/db/das/elegans</MAPMASTER>
> >        <DESCRIPTION>C. elegans annotations on chromosome I &
> > II</DESCRIPTION>
> >     </DSN>
> >     <DSN>
> >        <SOURCE id="test">test</SOURCE>
> >        <MAPMASTER>http://www.test.org/db/das/dicty</MAPMASTER>
> >        <DESCRIPTION>Test annotations</DESCRIPTION>
> >     </DSN>
> >  </DASDSN>
> > 
> > I have a dicty.conf file (copied from test.conf in the LDasServer 1.0
> > distribution).  It's DATASOURCE parameters are:
> > 
> > [DATA SOURCE]
> > description = Test annotations
> > adaptor     = dbi::mysqlopt
> > mapmaster   = http://crick.informatics.jax.org:8080/cgi-bin/das/dicty
> > database    = dicty
> > fasta_files =
> > user        = nobody
> > passwd      = xxxxxxx   (I x'ed this out on purpose)
> > 
> > Does anyone have any suggestions?
> > 
> > Since my 'dicty' database was loaded only with the test data, can it
> > server as a reference server (mapmaster parameter)?  Is there some other
> > test reference server that I could use instead?
> > 
> > Thank you,
> > 
> > - Ben
> > 
> > Benjamin L. King
> > Mouse Genome Informatics
> > The Jackson Laboratory
> > Bar Harbor, ME  04609  USA
> > 
> > blk@informatics.jax.org
> > 
> > _______________________________________________
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> > DAS@biodas.org
> > http://biodas.org/mailman/listinfo/das
>