[BioSQL-l] Problem listing all species(final nodes) of Fungi -Web example

alejandro aebmad at gmail.com
Fri Oct 5 13:16:15 UTC 2012


Hey hey,

I have a problem trying to run the example provided in the web to list all
species of Fungi in the NCBI taxon table. The query it doesn't finish, not
even when instead of asking for all the children of 'Fungi' I ask for the
taxon offspring of 'allomyces macrogynus' which only have one descendent.
Do you have any idea what I'm doing wrong? I loaded the taxonomy from NCBI
with the script provided in the web.

Best regards

-- 
Alejandro Barrera
Visitor scientist
EMBL-EBI

EMBL Outstation - Hinxton <http://www.ebi.ac.uk/>,
European Bioinformatics Institute <http://www.ebi.ac.uk/>,
Wellcome Trust Genome Campus,
Hinxton,
Cambridge, CB10 1SD
Alt. email:* abarrera at ebi.ac.uk*


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