[BioSQL-l] Gene Ontology get_secondary_ids (bioperl)

[Hilmar Lapp]

Hi Adam -

I'm not sure whether you've ever received a response to this - this and a bunch of other posts at that time fell through the cracks, sorry about that. Based on the code in bioperl-db, only dbxrefs and synonyms are stored at present, not secondary accessions. The module that does this is TermAdaptor.pm.

-hilmar

Sent with a tap.

On Jul 26, 2011, at 2:15 PM, Adam Witney <awitney at sgul.ac.uk> wrote:

> 
> When loading the Gene Ontology (gene_ontology.1_2.obo using bioperl) into biosql, do secondary_ids ('xref', 'alt_id') get stored anyway? 
> 
> thanks
> 
> adam
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