[BioSQL-l] Question regarding BioPerl / BioSQL - InterPro Optional IDs

[John LaCava]

Hi all,

Tried this on the BioPerl-l but seemed to make sense to try here as  
well.

I am trying to use the BioPerl-db script:

"load_seqdatabase.pl" to parse a SwissProt ".dat" file (Yeast.dat,  
this is the yeast proteome with annotations etc.).

The particular entry I am interested is the InterPro optional ID,  
which is the domain name.

I have put a short stub up which displays the 4 pieces of info I want  
to parse into my data base.
That can be found here:

http://github.com/johnraekwon/BioPerl---BioSQL---InterPro-Optional-IDs/tree/master

You can see that near the bottom, we get the optional ID:
$protein_ids->{interpro_domain} = $dblink->{optional_id};

I do not think the bioperl script load_seqdatabase.pl retrieves this  
information.  At least, I cannot find it in the db built from parsing  
a test .dat file.
I would like some help figuring out:
1) WHY doesn't it retrieve this information, since it seems to be  
parsing "all" annotations...
2) HOW might I edit the script to include this particular annotation  
of interest in the info it passes to my db (biosql)

I am a bit out of my depth on this, and so, any help is appreciated.

Cheers,
John