[BioSQL-l] SeqFeature scores

Chris Fields cjfields at illinois.edu
Tue Oct 14 17:28:02 UTC 2008


On Oct 14, 2008, at 11:03 AM, Mark Johnson wrote:

> On Mon, Oct 13, 2008 at 3:03 PM, Hilmar Lapp <hlapp at gmx.net> wrote:
>> Hi Mark, this was a known bug at some point. In fact, I can't swear  
>> that it
>> was solved, so if you are running the latest bioperl-db version  
>> then I think
>> it hasn't been. Can you confirm?
>>
>>       -hilmar
>
> I just pointed my scriptage to a freshly updated bioperl-live and
> bioperl-db (updated via svn a few minutes ago).  I'm seeing the same
> problem.  So, unless I'm hallucinating, this is still an issue.  Shall
> I open a new bug in bugzilla, or is there an old one you'd like to
> reopen?

I think open a new bug so we can track it.  Personally I'm not sure  
how we'd store score data in BioSQL.  Is 'score' within the schema?  I  
suppose we could add it as a specific tag value but that seems  
potentially hackish and prone to naming conflicts.

chris




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