[BioSQL-l] (no subject)

[James Procter]

Hi Jay.

Jay Vyas wrote:
> H Hilmer  :  Where is the data for BIO SQL ?  Is there a single non
> redundant PDB database which is in Bio SQL format?  Thanks !  Jay
...
BioSQL is a standardised database schema for storing sequence and
metadata, rather than a format for distributing sequence and annotation
data.

I'm not sure if any of the public bioinformatic database repositories
serve BioSQL dumps of their data, but it sounds like it might be a good
idea :)  However, since both BioJava and BioPerl have routines for
transparently mapping between Java or Perl objects and the sequences and
annotation in any BioSQL database - so its pretty easy for you to make a
version of the PDB NR yourself.

hope it helps
Jim

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J. B. Procter  (ENFIN/VAMSAS)  Barton Bioinformatics Research Group
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