[BioSQL-l] fill taxon_id field in bioentry from Seq object?
Hilmar Lapp
hlapp at gmx.net
Wed Aug 27 19:11:09 UTC 2008
$seq->species->ncbi_taxon_id()
BTW feel free to post this to the BioPerl mailing list bioperl-l at lists.open-bio.org
.
-hilmar
On Aug 27, 2008, at 6:49 AM, Adam Witney wrote:
>
> On 27 Aug 2008, at 11:44, Peter wrote:
>
>> On Wed, Aug 27, 2008 at 11:28 AM, Adam Witney <awitney at sgul.ac.uk>
>> wrote:
>>>
>>> is it possible to add a taxon_id to a Seq object such that when i
>>> save it to
>>> my BioSQL database, it is stored in the bioentry table?
>>>
>>> thanks for any help
>>>
>>> adam
>>
>> Which Bio* binding for BioSQL are you trying to use? BioPerl,
>> Biopython, BioJava etc
>
> sorry forgot to mention that bit.... I am using BioPerl
>
> thanks
>
> adam
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: Hilmar Lapp -:- Durham, NC -:- hlapp at gmx dot net :
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