[BioSQL-l] load_ncbi_taxonomy.pl
Gerben Menschaert
Gerben.Menschaert at UGent.be
Mon Apr 24 14:52:35 UTC 2006
Hello,
In the bioperl-db INSTALL file I saw that it's necessary to preload the ncbi
taxonomy:
####################################################
LOAD THE NCBI TAXONOMY
You should pre-load the NCBI taxonomy database using the
scripts/load_ncbi_taxonomy.pl script in the BioSQL package.
Otherwise you will see errors from mis-parsed organisms when you
attempt to load sequences.
####################################################
I cannot find this load_ncbi_taxonomy.pl script. Is this (parsing the
organism info correctly) taken care of in the load_seqdatabase.pl script
now?
Regs,
Gerben Menschaert
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