[BioSQL-l] how to reconstruct the sequences placed on bioSQL?

[Hrundi Barkshi]

Hi,

I am a beginner to BioSQL and I upload (Using load_seqdatabase.pl) the
example under the test folder ./t/data

perl ~/tmp/biosql/load_seqdatabase.pl --dbname BioDB --namespace
uniprot --debug --format swiss  swiss.da

Now I would like to revert the sequence querying the db

I have tried using bioentry2flat but I get the following error:


$ perl  bioentry2flat.pl BioSQL3 Q07021Connecting with mysql:BioSQL3:root:dbpass

------------- EXCEPTION  -------------
MSG: Attempting to write with no seq!
STACK Bio::SeqIO::embl::write_seq
/usr/lib/perl5/site_perl/5.8.6/Bio/SeqIO/embl.pm:394
STACK Bio::SeqIO::PRINT /usr/lib/perl5/site_perl/5.8.6/Bio/SeqIO.pm:661
STACK toplevel bioentry2flat.pl:69

-----------------------------------

Any advise?
Thanks in advance
Hrundi