[BioSQL-l] Re: gbrowse on top of biosql

[Hilmar Lapp]

It is possible. There were even benchmarks run for gbrowse against 
dbgff, chado, and biosql. Gbrowse will need a special adaptor that was 
written and tested by Simon at CSHL last year. I'm not sure whether 
this was included in the last gbrowse release, but the folks at the 
gbrowse mailing list can probably help you out.

	-hilmar

On Friday, January 21, 2005, at 11:06  AM, Genevieve Ann DeClerck wrote:

> Hi,
>
> I've recently installed biosql v.1.7 and bioperl-db v.1.2 (w/ mysql, 
> on OS
> X) and successfully loaded some sample data (parkin.fasta, parkin.gb). 
> I'm
> now trying to get this biosql database to work with gbrowse (1.62), but
> have not been successfully as of yet. From what I've gathered from
> scanning the BioSQL-l archives and from various google searches, it may
> not be possible to view a biosql database with gbrowse yet. Is this 
> true?
>
> Thanks,
> Genevieve
>
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>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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