[BioSQL-l] object-mapping

[Hilmar Lapp]

I'll write this up. I need it anyway for the paper. It'll take a week 
or two though. -hilmar

On Thursday, January 20, 2005, at 11:45  AM, Tamas Hegedus wrote:

> Hi,
>
> I also would like to understand the mapping between different 'flat 
> file  databases' (like SwissPrt, InterPro.xml) and the BioSQL schema.
>
> I think I tried most of the docs:
> => Bio::SeqIO::genbank and Bio::SeqIO::embl POD; Bio::Seq::RichSeq;
> => BioPerl, SeqIO howto and others;
> => I also tried to understand the 'loading'.pl scripts to find the 
> mapping, but I lost in the code.
>
> It would be great help for me if you could point a piece of code, or 
> give a reference to read about the 'general concept' behind the BioSQL 
> structure (e.g. in order to find out, how to map other, not 
> implemented databases into the BioSQL).
>
> Thanks,
> Tamas
>
> -- 
> Tamas Hegedus, Research Fellow | phone: (1) 480-301-6041
> Mayo Clinic Scottsdale         | fax:   (1) 480-301-7017
> 13000 E. Shea Blvd             | mailto:hegedus at mayo.edu
> Scottsdale, AZ, 85259          | http://hegedus.brumart.org
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>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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