[BioSQL-l] annotation bundle

[Hilmar Lapp]

  From which end are you coming programmatically? That is, do you 
capture your annotation in the object model of either bioperl, biojava, 
or biopython, or do you try to insert it directly into the database?

I'm asking because if you capture the annotation in one of the 
supporting object models then updating the database may be done for you 
if you re-serialize the modified (annotated) object. This is for 
instance how it will work with bioperl.

As for understanding the roles of particular tables in biosql, have you 
read doc/schema-overview.txt in the biosql download? It was written by 
Aaron with the 'end-user' in mind, and there is a section on the 
annotation bundle representation. If this document doesn't help you, 
could you be specific on what remains unclear and I'll try to answer as 
best as I can.

	-hilmar

On Apr 12, 2005, at 7:48 AM, carito vargas wrote:

> Hi,
>
> I want to store the important results of the annotation process of a
> sequence.  We already have a Data Base model, but we wanted to study
> the factibility of migrating it to BioSql Schema.  I don't know which
> tables I should use to store the posible CDS I obtain from a new
> sequence.  Still I don't understand well the use / meaning of the
> tables of the Annotation Bundle.
>
> Carito Vargas
> _______________________________________________
> BioSQL-l mailing list
> BioSQL-l at open-bio.org
> http://open-bio.org/mailman/listinfo/biosql-l
>
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------