[BioSQL-l] problems with schema loading.
Hilmar Lapp
hlapp at gmx.net
Sun Oct 17 00:39:35 EDT 2004
Which version of PostgreSQL are you using? I've tested the schema DDL
against 7.3.4 and there is no problem.
You don't necessarily need the two functions unless want to load the
NCBI taxonomy database using load_ncbi_taxonomy.pl. And even then the
script will run if you don't have them, it will just be very slow.
-hilmar
On Sunday, October 10, 2004, at 01:40 PM, Alexandre dos Santos
Cristino wrote:
>
>
> Hello biosqlers,
>
> I've tried to load the biosql schema for postgres in a debian linux,
> but
> there was some errors:
>
> bash$ psql bioseqdb < biosqldb-pg.sql
>
> .
> .
> .
> ERROR: parser: parse error at or near "volatile"
> ERROR: parser: parse error at or near "volatile"
>
> is this a real problem, because some initial load tests with python
> has
> worked with genbank files.
>
> thank you!
>
> cheers,
> alex
>
>
> --
> Alexandre dos Santos Cristino|- _ -| Depto. Genética - FMRP-USP
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--
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Hilmar Lapp email: lapp at gnf.org
GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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