[BioSQL-l] problems with schema loading.

Hilmar Lapp hlapp at gmx.net
Sun Oct 17 00:39:35 EDT 2004


Which version of PostgreSQL are you using? I've tested the schema DDL 
against 7.3.4 and there is no problem.

You don't necessarily need the two functions unless want to load the 
NCBI taxonomy database using load_ncbi_taxonomy.pl. And even then the 
script will run if you don't have them, it will just be very slow.

	-hilmar

On Sunday, October 10, 2004, at 01:40  PM, Alexandre dos Santos 
Cristino wrote:

>
>
>  Hello biosqlers,
>
>  I've tried to load the biosql schema for postgres in a debian linux, 
> but
> there was some errors:
>
> bash$ psql bioseqdb < biosqldb-pg.sql
>
> .
> .
> .
> ERROR:  parser: parse error at or near "volatile"
> ERROR:  parser: parse error at or near "volatile"
>
>  is this a real problem, because some initial load tests with python 
> has
> worked with genbank files.
>
>  thank you!
>
>  cheers,
>  alex
>
>
> --
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-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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