[BioSQL-l] crc for sequences
Hilmar Lapp
hlapp at gmx.net
Sun May 23 18:21:39 EDT 2004
I added a column CRC to biosequence in our Oracle version which I'll
soon propagate to the repository. This column is meant to hold a CRC
for the sequence, which - if indexed - can be very handy to lookup
perfect matches to a query sequence, and also to find fully redundant
sequences.
This column is supported by bioperl-db as an optional column that can
be enabled/disabled by commenting/uncommenting a single line in the
object-relational definition in BaseDriver.pm.
If added to the mysql/Pg versions of the schema, it would be an
optional column (nullable) and therefore backwardly compatible as well
as compatible with other bio* bindings unless any of those bindings did
a SELECT * FROM biosequence WHERE blah.
Any comments or objections to me adding this column to the mysql/Pg
versions as well?
-hilmar
--
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Hilmar Lapp email: lapp at gnf.org
GNF, San Diego, Ca. 92121 phone: +1-858-812-1757
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