[BioSQL-l] commits

Aaron J Mackey ajm6q at virginia.edu
Wed Mar 12 10:10:27 EST 2003


I've just made a few commits to the biosql HEAD; I'm happy to roll any of
them back that cause anguish.

1) ontology_term renamed to term (and yes, Hilmar, ontology_id is NOT
NULL; I can't toss in terms without saying where they come from)
2) ontology_relationship/_path renamed to term_relationship/_path
3) our other _relationship tables use "parent_*_id" (e.g.
parent_bioentry_id, child_seqfeature_id), so I changed term_relationship
to use subject_term_id, predicate_term_id, etc.  For the ontologically
challenged, this is a helpful reminder of what we're talking about (and
besides, all this shortening of names had to stop somewhere).
4) dbxref version lost its NOT NULL

I also rolled the changes to the postgres schema.

Hopefully these changes will only require simple search/replace on the
various object models' code bases, as they aren't structural changes.

Thanks for your continued patience,

-Aaron

-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey at virginia.edu





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