[BioSQL-l] CDS feature for genome bioentry

[Hilmar Lapp]

On Tuesday, July 15, 2003, at 03:45  PM, albert vilella wrote:

> $fkent .= "::".$tblalias[1] if @tblalias > 1;
> ### but as $tblalias[1] is primary_tag
>

Yes but why. In the script it says 
"Bio::Ontology::TermI=>Bio::SeqFeatureI tt::primary_tag". What I'm not 
clear about is how the ::primary_tag context jumped from the assignment 
to Bio::Ontology::TermI to Bio::Annotation::SimpleValue. My suspicion 
is that both actually mapping to the same entity confuses the code, but 
I need to get my hands free to track this down. (that is not to say you 
shouldn't touch this - you're more than welcome to give it a shot if 
you're in the mood ... and btw since you have looked at the code in 
that module you won't have overlooked the statement saying that this is 
better rewritten from scratch ...)

	-hilmar
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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