[BioSQL-l] taxonomy stuff

[Aaron J Mackey]

I'll work on getting Bio::DB::Taxonomy::biosql and associated work checked
in today, at least for you to take off with it.

-Aaron

On Wed, 2 Apr 2003, Jason Stajich wrote:

> Aaron - how far along is the taxonomy stuff?  If I wanted to query for a
> all the taxids that are within a specific division or even kingdom?
>
> Is there a taxonomy adaptor I can start working with and possibly
> extending.  I want to do the basic process of filtering my BLAST hits to
> only those within certain clades.
>
> I'm mapping gi -> taxaid from the table available from NCBI and then
> wanting to restrict to only those gi #s in my list.
>
> I'm happy to write things, just curious where they stand.  I realize we
> don't quite have the richer taxonomic objects up to speed in bioperl to
> represent everything in the taxondb just yet.
>
> -jason
>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
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-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey at virginia.edu