[BioRuby] reading multiple hmmpfam reports

[George Githinji]

With bioruby version 1.4.3.0001, I am not sure what is causing the no
method error with this code taken from the example code.

Running the code below gives a NoMethodError.

undefined method `reports' for Bio::HMMER::Report:Class (NoMethodError)

file = ARGV[0] # a hmmpfam text file with multiple results

Bio::HMMER.reports(File.read(file)) do |report|
  report.program['name']
  report.parameter['HMM file']
  report.query_info['Query sequence']
  report.hits.each do |hit|
    hit.accession
    hit.description
    hit.score
    hit.evalue
    hit.hsps.each do |hsp|
      hsp.accession
      hsp.domain
      hsp.evalue
      hsp.midline
    end
  end
end


-- 
---------------
Sincerely
George
Skype: george_g2
Blog: http://www.biorelated.com/
Twitter: http://twitter.com/#!/george_l