[BioRuby] Problem creating a new biogem

[Joachim Baran]

Once more: "bundle install" fails due to jeweler version. Had to update
Gemfile to 2.0.1.

Without fixing that, I get:

$ bundle install
Fetching https://github.com/technicalpickles/jeweler.git
Fetching gem metadata from http://rubygems.org/.........
Fetching additional metadata from http://rubygems.org/..
Resolving dependencies...
Could not find gem 'jeweler (~> 1.8.4) ruby' in
https://github.com/technicalpickles/jeweler.git (at master).
Source contains 'jeweler' at: 2.0.1

I would send a pull request about all that stuff myself, but I do not know
where the biogem repo is. Raoul's repo seems to be newer than what I get
when I install biogems.

Kim


On 6 April 2014 16:45, Joachim Baran <joachim.baran at gmail.com> wrote:

> One more: my Ruby 1.9.2 Travis configuration fails because activesupport
> does not support it anymore. Might be worth remove it from the default
> .travis.yml.
>
> Output is:
>
> Gem::InstallError: activesupport requires Ruby version >= 1.9.3.
>
> An error occurred while installing activesupport (4.0.4), and Bundler cannot
>
>
> Joachim
>
> On April 6, 2014 at 4:25:30 PM, Joachim Baran (joachim.baran at gmail.com)
> wrote:
>
>  Updating Jeweler fixed the problem.
>
>  The generated Gemfile specifies rdoc twice though, which shows up as a
> warning later.
>
>  Gemfile entries:
>
>  group :development do
>   gem "shoulda", ">= 0"
> *  gem "rdoc", "~> 3.12"*
>   gem "simplecov", ">= 0"
>   gem "jeweler", "~> 1.8.4", :git => "
> https://github.com/technicalpickles/jeweler.git"
>   gem "bundler", ">= 1.0.21"
>   gem "bio", ">= 1.4.2"
> *  gem "rdoc", "~> 3.12"*
> end
>
> Joachim
>
> On April 6, 2014 at 5:02:04 AM, Iain Barnett (iainspeed at gmail.com) wrote:
>
>  Jeweler is now at 2.0.1, so it's worth running `gem update jeweler` and
> seeing if that helps. I can see there are changes regarding Github between
> the version you've got and the current one.
>
> Regards,
> Iain
>
>
> On 5 April 2014 22:54, Joachim Baran <joachim.baran at gmail.com> wrote:
>
>>  Hi!
>>
>>    Looks like this:
>>
>>      *** LOCAL GEMS ***
>>
>>     jeweler (1.8.4)
>>
>>   I think the gem building process works nevertheless though. I have not
>> deployed it yet (on Rubygems, or Github), but it looks fine locally.
>>
>>  Joachim
>>
>>
>> On April 5, 2014 at 11:54:27 AM, Iain Barnett (iainspeed at gmail.com)
>> wrote:
>>
>>  Hi Joachim,
>>
>> What's the output of `gem list jeweler` ?
>>
>> Regards,
>> Iain
>>
>>
>> On 5 April 2014 18:15, Joachim Baran <joachim.baran at gmail.com> wrote:
>>
>>> Hi!
>>>
>>>   See below for the stack trace that I get when creating a new biogem.
>>>
>>>   My environment:
>>>
>>>   - ruby 2.0.0p247 (2013-06-27 revision 41674) [x86_64-darwin12.4.0]
>>>   - rubygems 2.0.5
>>>
>>>   Not sure whether this will create problems later. For now I have the
>>> biogem directory and I work with that, but it might be worth investigating
>>> this further.
>>>
>>> Thanks,
>>>
>>> Joachim
>>>
>>> $ biogem biostars-analytics
>>>         create  .gitignore
>>>         remove jeweler rcov lines
>>>         create  Rakefile
>>>         create  Gemfile
>>>         create  LICENSE.txt
>>>         create  README.rdoc
>>>         create  .document
>>>         create  lib
>>>         create  lib/bio-biostars-analytics.rb
>>>         create  test
>>>         create  test/helper.rb
>>>         create  test/test_bio-biostars-analytics.rb
>>>         create  lib/bio-biostars-analytics.rb
>>>         create  lib/bio-biostars-analytics
>>>         create  lib/bio-biostars-analytics/biostars-analytics.rb
>>>         create  README.rdoc
>>>         create  README.md
>>>         append  .gitignore
>>>         append  .travis.yml
>>> Jeweler has prepared your gem in bioruby-biostars-analytics
>>> Please provide your Github password to create the Github repository
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/bio-gem-1.3.5/lib/bio-gem/mod/jeweler.rb:84:in
>>> `rescue in create_and_push_repo': uninitialized constant
>>> Jeweler::Generator::Github (NameError)
>>>         from
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/bio-gem-1.3.5/lib/bio-gem/mod/jeweler.rb:79:in
>>> `create_and_push_repo'
>>>         from
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/jeweler-1.8.4/lib/jeweler/generator.rb:130:in
>>> `run'
>>>         from
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/bio-gem-1.3.5/lib/bio-gem/application.rb:38:in
>>> `block in run!'
>>>         from /opt/local/lib/ruby1.9/1.9.1/fileutils.rb:125:in `chdir'
>>>         from /opt/local/lib/ruby1.9/1.9.1/fileutils.rb:125:in `cd'
>>>         from
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/bio-gem-1.3.5/lib/bio-gem/application.rb:36:in
>>> `run!'
>>>         from
>>> /Users/joachim/.rvm/gems/ruby-2.0.0-p247/gems/bio-gem-1.3.5/bin/biogem:13:in
>>> `<top (required)>'
>>>         from /opt/local/bin/biogem:19:in `load'
>>>         from /opt/local/bin/biogem:19:in `<main>'
>>>
>>>
>>> _______________________________________________
>>> BioRuby Project - http://www.bioruby.org/
>>> BioRuby mailing list
>>> BioRuby at lists.open-bio.org
>>> http://lists.open-bio.org/mailman/listinfo/bioruby
>>>
>>
>>
>