[BioRuby] Google Summer of Code project ideas

Mic mictadlo at gmail.com
Sat Mar 3 01:14:40 UTC 2012


Howabout to include:
* Bedtools
* tabix


On Sat, Mar 3, 2012 at 12:04 AM, Peter Cock <p.j.a.cock at googlemail.com>wrote:

> On 10 Feb, Robert Buels wrote (posted by Chris Field):
> > Hi all,
> >
> > I'm going to be OBF project admin again this year for Google Summer of
> > code.  OBF's application is due in a couple of weeks, and we need to
> update
> > our project ideas on the OBF wiki page and on each project's individual
> wiki
> > pages.
> >
> > So, for each of the OBF projects that wants to do GSoC again this year,
> > please:
> >
> > a.) Update the list of project ideas on your project's GSoC page
> > (BioPython, BioPerl, BioRuby, etc).  Add new ones, remove ones that have
> > already been done or no longer relevant, etc.
> >
> > b.) Update the list of project ideas on the main OBF GSoC page
> > (http://www.open-bio.org/wiki/Google_Summer_of_Code) to match.
> >
> > c.) Let me know via email that you have done so and it's ready for Google
> > to peruse.
> >
> > Please have the updates done, if possible, by this Friday (March 11). The
> > number and quality of the project ideas are part of the evaluation
> process
> > for whether OBF is accepted as a Summer of Code organization again this
> > year, so let's come up with some good ones.  :-)
> >
> > Rob
> >
> > ----
> > Robert Buels
>
> Hi BioRuby folk,
>
> You seem to have been the most organized Bio* project for GSoC so far, and
> have
> put together good set of GSoC project ideas by Rob's target date. Well
> done :)
>
> Is the list here complete now?
> http://bioruby.open-bio.org/wiki/Google_Summer_of_Code
>
>    3.1.1 Write the world's fastest parallelized GFF3/GTF parser in D,
> for Ruby FFI
>    3.1.2 Extend bio-alignment plug-in with Multiple Alignment Format
> -MAF- parser (FFI?)
>    3.1.3 Testing framework for biogem plugins
>    3.1.4 Adding social networking functionality to BioRuby.org
>    3.1.5 Update bio-images a plugin to represent bio-object with cool
> images
>    3.1.6 Update to the Ruby Ensembl API
>
> I noticed "Testing framework for biogem plugins" was missing on the OBF
> summary page, so I added it:
> http://www.open-bio.org/wiki/Google_Summer_of_Code
>
> Regards,
>
> Peter
>
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