[BioRuby] Workflows and Parallelization

[MISHIMA, Hiroyuki]

Hi Jan and all,

I am looking forward to hearing from you about your experience on rake
and NGS analyses.

I have read your blog informative article (
http://saaientist.blogspot.com/ ) about rake for software projects and a
GitHub repository BioRake ( https://github.com/jandot/biorake ).

BioRake's "event" method is elegant. In my DINDEL workflow rakefile, I
use a dummy file as a representative of all dynamically generated
intermediate files in Stage 3. The event method may express the logic
and simplify the description.

Sincerely yours,
Hiro.

Jan Aerts wrote (2011/02/07 17:42):
> I've been using rake for my NGS analyses while I still worked at
> Sanger. Will post more about that in the next couple of days.
>
> jan.

-- 
MISHIMA, Hiroyuki, DDS, Ph.D.
COE Research Fellow
Department of Human Genetics
Nagasaki University Graduate School of Biomedical Sciences