[BioRuby] Rakefile for the GATK workflow

[MISHIMA, Hiroyuki]

Hi all,

I did my assignment at last IRC meeting.

1) I updated the Workflows page in the BioRuby wiki.
see http://bioruby.open-bio.org/wiki/Workflows

I added Michael Barton's comment about Boson, and pointers to lists of
job schedulers.


2) I uploaded another rakefile sample for the GATK workflow.
see https://github.com/misshie/RakefileGATK

Broad institutes's Genome Analysis Toolkit (GATK) is a toolkit to detect
genomic variation (mainly SNVs) from mapped NGS short reads data (BAM
files). It is consists of many Java programs and requires long
command-line options. Moreover, GATK team changes their recommended
workflow frequently because of active development. Thus well-organized
workflow management is preferable.

My rakefiles are still not well-organized. Not DRY. Please let me know
your comment.

Sincerely yours,
Hiro.

-- 
MISHIMA, Hiroyuki, DDS, Ph.D.
COE Research Fellow
Department of Human Genetics
Nagasaki University Graduate School of Biomedical Sciences