[BioRuby] Ruby 1.9.2 and BioRuby

Raoul Bonnal bonnalraoul at ingm.it
Mon Sep 27 10:52:50 UTC 2010


Hello guys, 
Do you have any idea how to solve this error?
/home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:479:in `load_missing_constant': Bio is not missing constant Sequence! (ArgumentError)
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:183:in `block in const_missing'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:181:in `each'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:181:in `const_missing'
        from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:15:in `<module:Bio>'
        from /home/ra/deve/bioruby/lib/bio/sequence/compat.rb:13:in `<top (required)>'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
        from /home/ra/deve/bioruby/lib/bio/sequence.rb:15:in `<top (required)>'
        from /home/ra/deve/bioruby/lib/bio/shell/plugin/midi.rb:20:in `<top (required)>'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
        from /home/ra/deve/bioruby/lib/bio/shell.rb:29:in `<module:Shell>'
        from /home/ra/deve/bioruby/lib/bio/shell.rb:17:in `<top (required)>'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from <internal:lib/rubygems/custom_require>:29:in `require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `block in require'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `block in load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:591:in `new_constants_in'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:225:in `load_dependency'
        from /home/ra/.rvm/gems/ruby-1.9.2-p0/gems/activesupport-3.0.0/lib/active_support/dependencies.rb:239:in `require'
        from /home/ra/deve/bioruby/bin/bioruby:18:in `<main>'

--
Raoul J.P. Bonnal
Life Science Informatics
Integrative Biology Program
Fondazione INGM
Via F. Sforza 28
20122 Milano, IT
phone: +39 02 006 623  26
fax: +39 02 006 623 46
http://www.ingm.it







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