ngoto at gen-info.osaka-u.ac.jp
Wed Jul 7 14:56:46 UTC 2010
As far as I know, no Ruby/BioRuby components like BioPerl's
Bio::Assembly are available.
Currently, sequences and qualities formatted in Fasta, FASTQ, ABI, SCF
and other file formats can be treated with BioRuby.
However, I don't know good ways to handle assembly output data.
ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org
> Hi all
> I've worked with BioPerl in the past, but I'm considering using ruby/bioruby
> for a new project and have a few questions.
> - I can't seem to find a Bio::Assembly module for BioRuby. Has anyone
> done any work on this?
> - What's the current solution for working with assembly data in BioRuby?
> If nothing is out there, I may try to take a whack at this myself.
> BioRuby Project - http://www.bioruby.org/
> BioRuby mailing list
> BioRuby at lists.open-bio.org
More information about the BioRuby