[BioRuby] Bio::Assembly

Naohisa Goto ngoto at gen-info.osaka-u.ac.jp
Wed Jul 7 14:56:46 UTC 2010

Hi Chase,

As far as I know, no Ruby/BioRuby components like BioPerl's
Bio::Assembly are available.

Currently, sequences and qualities formatted in Fasta, FASTQ, ABI, SCF
and other file formats can be treated with BioRuby.
However, I don't know good ways to handle assembly output data.


Naohisa Goto
ngoto at gen-info.osaka-u.ac.jp / ng at bioruby.org

> Hi all
> I've worked with BioPerl in the past, but I'm considering using ruby/bioruby
> for a new project and have a few questions.
>    - I can't seem to find a Bio::Assembly module for BioRuby.  Has anyone
>    done any work on this?
>    - What's the current solution for working with assembly data in BioRuby?
> If nothing is out there, I may try to take a whack at this myself.
> Thanks,
> Chase
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